One Joe series missing from your list is Snake-Eyes Declassified (2005 by Devils Due)
It basically takes all of Larry Hama's stories about Snake-Eye's origin and puts it into one story in chronological order.
It's all in the ARAH Marvel series; however, in the ARAH Marvel series it's spread out and not in order.
I agree with Maloney; I enjoyed all the Declassified books: Snake-Eyes, GI Joe, Dreadnoks, Scarlett (some more than others).
You should keep on reading the original series too by picking up 155.5 - current. These have been reprinted in TPB and even large hardcovers.